Index

_

__call__() (cminject.actions.brownian_motion.MolecularFlowBrownianMotionStep method) (cminject.actions.brownian_motion.StokesBrownianMotionStep method) (cminject.actions.temperature.MolecularFlowUpdateTemperature method) (cminject.actions.TrackTrajectory method) (cminject.base.Action method) (cminject.utils.interpolation.Interp2D method) (cminject.utils.interpolation.Interp3D method) (cminject.utils.interpolation.InterpND method)

A

a_brown_roth() (in module cminject.calc.fluid_flow) a_brown_stokes() (in module cminject.calc.fluid_flow) a_roth() (in module cminject.calc.fluid_flow) a_stokes() (in module cminject.calc.fluid_flow) Action (class in cminject.base) actions (cminject.base.Device property) add_action() (cminject.base.Device method) (cminject.experiment.Experiment method)

add_detector() (cminject.experiment.Experiment method) add_device() (cminject.experiment.Experiment method) add_field() (cminject.base.Device method) add_source() (cminject.experiment.Experiment method) ADLStackDevice (class in cminject.setups.gold_adl) as_array() (cminject.base.Particle method) as_dtype() (cminject.base.Particle method)

B

Boundary (class in cminject.base)

boundary (cminject.base.Device property)

C

cached_property (class in cminject.utils.perf) calc_slip_correction() (cminject.fields.fluid_flow.StokesDragForceField method) calculate_acceleration() (cminject.base.Device method) (cminject.base.Field method) (cminject.fields.fluid_flow.MolecularFlowDragForceField method) (cminject.fields.fluid_flow.StokesDragForceField method) (cminject.fields.function_based.FunctionField method) (cminject.fields.photophoresis.DesyatnikovPhotophoreticLaserField method) calculate_vortex_irradiance() (cminject.fields.photophoresis.VortexBeamPhotophoreticForceField method) cminject module cminject.actions module cminject.actions.brownian_motion module cminject.actions.temperature module cminject.base module cminject.boundaries module cminject.boundaries.field_based module cminject.boundaries.simple module cminject.calc module cminject.calc.fluid_flow module cminject.detectors module cminject.detectors.simple module cminject.devices module cminject.devices.fluid_flow module cminject.devices.photophoresis module cminject.experiment module cminject.fields module cminject.fields.fluid_flow module cminject.fields.function_based module cminject.fields.photophoresis module cminject.fields.regular_grid_interpolation module cminject.particles module cminject.particles.spherical module cminject.particles.status module cminject.result_storages module

cminject.result_storages.hdf5 module cminject.setups module cminject.setups.desyatnikov_photophoresis module cminject.setups.example module cminject.setups.gold_adl module cminject.setups.one_flow_field module cminject.sources module cminject.sources.variable_distributions module cminject.utils module cminject.utils.args module cminject.utils.cython_interpolation module cminject.utils.distributions module cminject.utils.global_config module cminject.utils.interpolation module cminject.utils.perf module cminject.utils.structured_txt_hdf5 module cminject.utils.visualization module config_change() (cminject.actions.brownian_motion.MolecularFlowBrownianMotionStep method) (cminject.actions.brownian_motion.StokesBrownianMotionStep method) (cminject.actions.temperature.MolecularFlowUpdateTemperature method) (cminject.base.Device method) (cminject.boundaries.simple.CuboidBoundary method) (cminject.detectors.simple.SimpleZDetector method) (cminject.fields.regular_grid_interpolation.RegularGridInterpolationField method) (cminject.sources.variable_distributions.VariableDistributionSource method) (cminject.sources.VariableDistributionSource method) (cminject.utils.global_config.ConfigSubscriber method) ConfigKey (class in cminject.utils.global_config) ConfigSubscriber (class in cminject.utils.global_config) constant (in module cminject.utils.distributions) constant_properties (cminject.base.Particle attribute) (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) construct_experiment() (cminject.base.Setup static method) (cminject.setups.desyatnikov_photophoresis.DesyatnikovPhotophoresisSetup static method) (cminject.setups.DesyatnikovPhotophoresisSetup static method) (cminject.setups.example.ExampleSetup static method) (cminject.setups.gold_adl.GoldADLSetup static method) (cminject.setups.one_flow_field.OneFlowFieldSetup static method) (cminject.setups.OneFlowFieldSetup static method) CuboidBoundary (class in cminject.boundaries.simple)

D

data_frame_to_data_grid() (in module cminject.utils.structured_txt_hdf5) DesyatnikovPhotophoresisDevice (class in cminject.devices.photophoresis) DesyatnikovPhotophoresisSetup (class in cminject.setups) (class in cminject.setups.desyatnikov_photophoresis) DesyatnikovPhotophoreticLaserField (class in cminject.fields.photophoresis) Detector (class in cminject.base)

detector_hits (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) Device (class in cminject.base) DiracDeltaDistribution (class in cminject.utils.distributions) Distribution (class in cminject.utils.distributions) distribution_description() (in module cminject.utils.args) DragForceInterpolationField (class in cminject.fields.fluid_flow)

E

erf_vec_1d() (in module cminject.calc)

ExampleSetup (class in cminject.setups.example) Experiment (class in cminject.experiment)

F

Field (class in cminject.base) fields (cminject.base.Device property) file_handle (cminject.result_storages.hdf5.HDF5ResultStorage property) (cminject.result_storages.HDF5ResultStorage property)

FlowType (class in cminject.devices.fluid_flow) FluidFlowDevice (class in cminject.devices.fluid_flow) FunctionField (class in cminject.fields.function_based)

G

GaussianDistribution (class in cminject.utils.distributions) generate() (cminject.utils.distributions.DiracDeltaDistribution method) (cminject.utils.distributions.Distribution method) (cminject.utils.distributions.GaussianDistribution method) (cminject.utils.distributions.LinearDistribution method) (cminject.utils.distributions.NormOfDistributions method) (cminject.utils.distributions.UniformDistribution method) generate_particles() (cminject.base.Source method) (cminject.sources.variable_distributions.VariableDistributionSource method) (cminject.sources.VariableDistributionSource method) get_detectors() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) get_dimensions() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) get_local_properties() (cminject.fields.fluid_flow.DragForceInterpolationField method) get_parser() (cminject.base.Setup static method) (cminject.setups.desyatnikov_photophoresis.DesyatnikovPhotophoresisSetup static method) (cminject.setups.DesyatnikovPhotophoresisSetup static method) (cminject.setups.example.ExampleSetup static method) (cminject.setups.gold_adl.GoldADLSetup static method) (cminject.setups.one_flow_field.OneFlowFieldSetup static method) (cminject.setups.OneFlowFieldSetup static method)

get_particle_simulation_state() (in module cminject.experiment) get_properties() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) get_regular_grid_interpolator() (in module cminject.utils.interpolation) get_tracked_final() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) get_tracked_initial() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) get_trajectories() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method) GoldADLSetup (class in cminject.setups.gold_adl) GridFieldBasedBoundary (class in cminject.boundaries.field_based)

H

hdf5_to_data_frame() (in module cminject.utils.structured_txt_hdf5) hdf5_to_data_grid() (in module cminject.utils.structured_txt_hdf5)

HDF5ResultStorage (class in cminject.result_storages) (class in cminject.result_storages.hdf5) hit_state (cminject.base.ParticleDetectorHit property)

I

identifier (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) ImpossiblePropagationException InfiniteBoundary (class in cminject.boundaries.simple) initial_tracked_properties (cminject.base.Particle property) Interp2D (class in cminject.utils.interpolation) interp2d() (in module cminject.utils.cython_interpolation) Interp3D (class in cminject.utils.interpolation) interp3d() (in module cminject.utils.cython_interpolation) InterpND (class in cminject.utils.interpolation)

interpolate() (cminject.fields.fluid_flow.DragForceInterpolationField method) is_finite() (in module cminject.calc) is_particle_inside() (cminject.base.Boundary method) (cminject.base.Device method) (cminject.boundaries.field_based.GridFieldBasedBoundary method) (cminject.boundaries.simple.CuboidBoundary method) (cminject.boundaries.simple.InfiniteBoundary method) (cminject.boundaries.simple.SimpleZBoundary method) (cminject.fields.fluid_flow.DragForceInterpolationField method) (cminject.fields.regular_grid_interpolation.RegularGridInterpolationField method) (cminject.setups.gold_adl.SkimmersBoundary method)

K

kappa() (cminject.fields.photophoresis.DesyatnikovPhotophoreticLaserField method)

L

LinearDistribution (class in cminject.utils.distributions)

lost (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute)

M

mass (cminject.base.Particle attribute) (cminject.particles.spherical.SphericalParticle attribute) module cminject cminject.actions cminject.actions.brownian_motion cminject.actions.temperature cminject.base cminject.boundaries cminject.boundaries.field_based cminject.boundaries.simple cminject.calc cminject.calc.fluid_flow cminject.detectors cminject.detectors.simple cminject.devices cminject.devices.fluid_flow cminject.devices.photophoresis cminject.experiment cminject.fields cminject.fields.fluid_flow cminject.fields.function_based cminject.fields.photophoresis cminject.fields.regular_grid_interpolation cminject.particles cminject.particles.spherical cminject.particles.status cminject.result_storages cminject.result_storages.hdf5 cminject.setups cminject.setups.desyatnikov_photophoresis cminject.setups.example cminject.setups.gold_adl cminject.setups.one_flow_field cminject.sources cminject.sources.variable_distributions cminject.utils cminject.utils.args cminject.utils.cython_interpolation cminject.utils.distributions cminject.utils.global_config cminject.utils.interpolation cminject.utils.perf cminject.utils.structured_txt_hdf5 cminject.utils.visualization

MOLECULAR_FLOW (cminject.devices.fluid_flow.FlowType attribute) MolecularFlowBrownianMotionStep (class in cminject.actions.brownian_motion) MolecularFlowDragForceField (class in cminject.fields.fluid_flow) MolecularFlowUpdateTemperature (class in cminject.actions.temperature)

N

natural_number() (in module cminject.utils.args) NormOfDistributions (class in cminject.utils.distributions)

NUMBER_OF_DIMENSIONS (cminject.utils.global_config.ConfigKey attribute) numpy_method_cache() (in module cminject.utils.perf)

O

OneFlowFieldSetup (class in cminject.setups) (class in cminject.setups.one_flow_field)

P

parse_dimension_description() (in module cminject.utils.args) parse_distribution() (in module cminject.utils.distributions) parse_multiple_dimensions_description() (in module cminject.utils.args) Particle (class in cminject.base) ParticleDetectorHit (class in cminject.base) phase_space_position (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) plot_detector() (in module cminject.utils.visualization)

plot_detectors() (in module cminject.utils.visualization) plot_trajectories() (in module cminject.utils.visualization) plot_trajectories_colored() (in module cminject.utils.visualization) plot_trajectories_movie() (in module cminject.utils.visualization) position (cminject.base.Particle property) postprocess_integration_step() (in module cminject.experiment) postprocess_particle() (in module cminject.experiment) pp_force() (cminject.fields.photophoresis.DesyatnikovPhotophoreticLaserField method) propagate_field_free() (in module cminject.experiment)

R

reached_any_detector (cminject.base.Particle property) RegularGridInterpolationField (class in cminject.fields.regular_grid_interpolation)

ResultStorage (class in cminject.base) run() (cminject.experiment.Experiment method) run_actions() (cminject.base.Device method)

S

set_integrator() (cminject.experiment.Experiment method) Setup (class in cminject.base) SetupArgumentParser (class in cminject.utils.args) SetupHelpFormatter (class in cminject.utils.args) SimpleZBoundary (class in cminject.boundaries.simple) SimpleZDetector (class in cminject.detectors.simple) simulate_particle() (in module cminject.experiment) SkimmersBoundary (class in cminject.setups.gold_adl) SkimmersDevice (class in cminject.setups.gold_adl) slip_correction_4k() (in module cminject.calc.fluid_flow)

slip_correction_hutchins() (in module cminject.calc.fluid_flow) Source (class in cminject.base) spatial_derivatives() (in module cminject.experiment) SphericalParticle (class in cminject.particles.spherical) split_at_inflections() (in module cminject.utils.interpolation) STOKES (cminject.devices.fluid_flow.FlowType attribute) StokesBrownianMotionStep (class in cminject.actions.brownian_motion) StokesDragForceField (class in cminject.fields.fluid_flow) store_results() (cminject.base.ResultStorage method) (cminject.result_storages.hdf5.HDF5ResultStorage method) (cminject.result_storages.HDF5ResultStorage method)

T

ThermallyConductiveSphericalParticle (class in cminject.particles.spherical) time (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) time_interval (cminject.experiment.Experiment property) time_step (cminject.experiment.Experiment property) TIME_STEP (cminject.utils.global_config.ConfigKey attribute)

tracked_properties (cminject.base.Particle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) TrackTrajectory (class in cminject.actions) trajectory (cminject.particles.spherical.SphericalParticle attribute) (cminject.particles.spherical.ThermallyConductiveSphericalParticle attribute) try_to_detect() (cminject.base.Detector method) txt_to_hdf5() (in module cminject.utils.structured_txt_hdf5)

U

UniformDistribution (class in cminject.utils.distributions)

V

validate_args() (cminject.base.Setup static method) (cminject.setups.desyatnikov_photophoresis.DesyatnikovPhotophoresisSetup static method) (cminject.setups.DesyatnikovPhotophoresisSetup static method) (cminject.setups.one_flow_field.OneFlowFieldSetup static method) (cminject.setups.OneFlowFieldSetup static method)

VariableDistributionSource (class in cminject.sources) (class in cminject.sources.variable_distributions) velocity (cminject.base.Particle property) VortexBeamPhotophoreticForceField (class in cminject.fields.photophoresis)

W

w() (cminject.fields.photophoresis.DesyatnikovPhotophoreticLaserField method)

Z

z_boundary (cminject.base.Device property) (cminject.base.ZBounded property) (cminject.boundaries.field_based.GridFieldBasedBoundary property) (cminject.boundaries.simple.InfiniteBoundary property) (cminject.boundaries.simple.SimpleZBoundary property) (cminject.detectors.simple.SimpleZDetector property) (cminject.experiment.Experiment property) (cminject.fields.fluid_flow.DragForceInterpolationField property) (cminject.fields.function_based.FunctionField property) (cminject.fields.photophoresis.VortexBeamPhotophoreticForceField attribute) (cminject.fields.regular_grid_interpolation.RegularGridInterpolationField property) (cminject.setups.gold_adl.SkimmersBoundary property)

ZBounded (class in cminject.base)